GgaEX6041821 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10711074-10714835:-
Coord C1 exon
chr7:10714667-10714835
Coord A exon
chr7:10712705-10712831
Coord C2 exon
chr7:10711074-10711293
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAGTGCTTTCTAATACTTAGGTG
3' ss Score
4.71
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTGTATTTGTAGATGATGTTAACATGCCAGCCCGAGAGGTCTATGGTGCTCAACCTCCTGTTGAGTTACTACGACAGTGGTTAGATCACTGGAATTGGTATGACCTTAAAGACTGCTCAATGATAAAACTTGTAGATATTCAGATTGTCTGTGCAATGGGACCACCGG
Seq A exon
GTGGTGGTCGAAACCCAGTAACACCACGATTCTTGCGACACTTCAATAAAATTACCATTAATGAGTTTGATGATGAATCCATGTACACAATATTTTCTAGAATCTTAGACTGGCATCTGACTATATG
Seq C2 exon
TTATACCTTTCCACCACAATATGTTGAATTGATTCCACAAATTATTAATGGAACCATGCGTATATATAAAGAAGCTATGAAGAATCTACTTCCTACCCCAGCTAAATCACACTATCTGTTCAATCTCCGTGATTTTTCACGTGTTATTCAAGGTGTTTGCCTGTCAAGGCCTGATACAACAGAATCTACAGGAATGATAAAACGTCTCTGGGTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.4=100)
A:
PF127752=AAA_7=FE(15.3=100)
C2:
PF127752=AAA_7=FE(26.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTAACATGCCAGCCCGA
R:
AGCTGGGGTAGGAAGTAGATTCT
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]