RnoEX6039695 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60211133-60213493:-
Coord C1 exon
chr9:60213325-60213493
Coord A exon
chr9:60212312-60212438
Coord C2 exon
chr9:60211133-60211352
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTATACTTTCTAATCTTTAGGTG
3' ss Score
9.7
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
ATTGTCTTTGTAGACGACGTGAATATGCCTGCTCGAGAGGTCTATGGGGCTCAGCCACCCATTGAGTTACTTAGACAGTGGTTAGATCATTGGAATTGGTACGACCTCAAAGATTGCTCTATGATTAAACTGGTGGACATCCAGATCATGTGTGCTATGGGCCCTCCAG
Seq A exon
GTGGTGGCCGAAATCCAATAACTCCTCGATACATGAGACATTTCAATATTATAACCATCAATGAGTTTAGTGACAAGTCCATGTTCACAATCTTCTCCAGAATCCTGACCTGGCATTTAAGGACCTG
Seq C2 exon
TTATAAGTTTCCAGATGATTTTCTAGATTTGACAACACAAATTGTAAATGGCACAATGACCCTGTACAAAGATGCCATGAAGAACCTCTTACCTACTCCAGCTAAGTCTCACTATCTGTTCAACCTTCGTGATTTCTCCCGAGTCATACAAGGTGTTTGTTTGTCAAGACCAGAAACTGCAGAAAACAAAGAGGCCATTAAACGCCTGTGGGTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.4=100)
A:
PF127752=AAA_7=FE(15.3=100)
C2:
PF127752=AAA_7=FE(26.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATGTGTGCTATGGGCCC
R:
CTCATGAACCCACAGGCGTTT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]