MmuEX0015055 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46281454-46283882:+
Coord C1 exon
chr1:46281454-46281622
Coord A exon
chr1:46282611-46282737
Coord C2 exon
chr1:46283663-46283882
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCATGCTTTCTAATCTTTAGGTG
3' ss Score
9.47
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
ATAGTCTTTGTAGATGATGTGAATATGCCTGCCCGAGAGGTCTATGGGGCTCAGCCTCCCATTGAATTACTTAGACAGTGGTTAGATCATTGGAATTGGTACGACCTCAAAGATTGCTCTGTGATTAAACTAGTGGACATCCAGATCATGTGCGCTATGGGTCCTCCAG
Seq A exon
GTGGTGGCCGAAATCCAATAACTCCTCGTTACATGAGACATTTCAATATTGTAACCATCAATGAATTTAGTGACAAGTCTATGTTCACAATCTTCTCCAGAATCCTGGCCTGGCATCTAAGAACCTG
Seq C2 exon
TTATAAGTTTCCAGATGATTTTCTAGACTTGACTACACAAATAGTGAATGGTACAATGGCCCTGTACAAAGATGCCATGAAGAATCTCTTACCTACTCCAGCTAAATCTCACTATTTGTTCAACCTTCGAGATTTCTCCCGAGTCATACAAGGTGTTTGTTTGTCAAGACCAGAAACAGCAGAAAACAAAGAGGCCATTAAACGCCTGTGGGTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'42-39,'42-38,43-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.4=100)
A:
PF127752=AAA_7=FE(15.3=100)
C2:
PF127752=AAA_7=PD(26.6=20.0),PF134051=EF-hand_6=WD(100=8.2),PF127802=AAA_8=PU(73.2=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCAGATCATGTGCGCT
R:
CTCATGAACCCACAGGCGTTT
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: