GgaEX6043143 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33732858-33899905:-
Coord C1 exon
chr7:33899776-33899905
Coord A exon
chr7:33809585-33809722
Coord C2 exon
chr7:33732858-33732977
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTGTCTATTTTTAGGTC
3' ss Score
13.05
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TCAGAGGAACATCATTTGTGTGATGTAGGAGAGTTTCTGTGCCATGATCGCATGACTTGTGTCTCCCAGCACTGGCTGTGTGATGGAGAGCCTGACTGCCCTGATGATTCAGATGAGTCTGTAGACACAT
Seq A exon
GTCCTGAAGAACAAGATTTCAAATGCCCTCTGAATTATATGACCTGCATTGGTACAAACAAATGCATTCACTTGTCCCAGCTCTGCAATGGTGTTTATGACTGTTCTGATGGGTACGATGAAGGAGTGCATTGTCGAG
Seq C2 exon
AATTGCTACCCAGGTGCCAACAGATGAATTGCCAATATAAATGTGCCATTACCAGGAATGGCAGCAAGTGTTACTGTGGAGATGGCTATGAAACAAGCAATGATGGAAGAAGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'2-11,'2-7,5-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.9),PF0005713=Ldl_recept_a=PU(4.3=4.5)
A:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=PD(93.6=93.6)
C2:
PF126622=cEGF=PU(83.3=48.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGAACATCATTTGTGTGA
R:
TGCAGCTTCTTCCATCATTGCT
Band lengths:
247-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]