GgaEX6043143 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31616214-31783273:-
Coord C1 exon
chr7:31783148-31783273
Coord A exon
chr7:31692941-31693078
Coord C2 exon
chr7:31616214-31616333
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTGTCTATTTTTAGGTC
3' ss Score
13.05
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGGAACATCATTTGTGTGATGTAGGAGAGTTTCTGTGCCATGATCGCATGACTTGTGTCTCCCAGCACTGGCTGTGTGATGGAGAGCCTGACTGCCCTGATGATTCAGATGAGTCTGTAGACACAT
Seq A exon
GTCCTGAAGAACAAGATTTCAAATGCCCTCTGAATTATATGACCTGCATTGGTACAAACAAATGCATTCACTTGTCCCAGCTCTGCAATGGTGTTTATGACTGTTCTGATGGGTACGATGAAGGAGTGCATTGTCGAG
Seq C2 exon
AATTGCTACCCAGGTGCCAACAGATGAATTGCCAATATAAATGTGCCATTACCAGGAATGGCAGCAAGTGTTACTGTGGAGATGGCTATGAAACAAGCAATGATGGAAGAAGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'5-23,'5-15,8-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=93.0),PF0005713=Ldl_recept_a=PU(4.3=4.7)
A:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=PD(93.6=93.6)
C2:
PF126622=cEGF=PU(83.3=48.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGTGTGATGTAGGAGAGT
R:
AAGACTTTTTGCTCCGCCACC
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]