GgaEX1033884 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31614866-31693078:-
Coord C1 exon
chr7:31692941-31693078
Coord A exon
chr7:31616214-31616333
Coord C2 exon
chr7:31614866-31614994
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTAAATAATTTTATTTACAGAAT
3' ss Score
5.89
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTCCTGAAGAACAAGATTTCAAATGCCCTCTGAATTATATGACCTGCATTGGTACAAACAAATGCATTCACTTGTCCCAGCTCTGCAATGGTGTTTATGACTGTTCTGATGGGTACGATGAAGGAGTGCATTGTCGAG
Seq A exon
AATTGCTACCCAGGTGCCAACAGATGAATTGCCAATATAAATGTGCCATTACCAGGAATGGCAGCAAGTGTTACTGTGGAGATGGCTATGAAACAAGCAATGATGGAAGAAGCTGCACAG
Seq C2 exon
ATTTGAATGAATGTAATACATATGGAAGCTGCAGCCAGATGTGTGTGAATACGGATGGATCTTACACCTGTAGCTGTGTAGAGGGTTACGTTCTTCAGCCTGATAACAAATCTTGCAAGGCCAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'8-21,'8-20,10-21
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=PD(93.6=93.6)
A:
PF126622=cEGF=PU(83.3=48.8)
C2:
PF126622=cEGF=PD(12.5=6.8),PF146701=FXa_inhibition=WD(100=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTCTGAATTATATGACCTGC
R:
TTTTTGGCCTTGCAAGATTTGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]