DreEX0043686 @ danRer10
Exon Skipping
Gene
ENSDARG00000004789 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14666280-14702662:-
Coord C1 exon
chr22:14702525-14702662
Coord A exon
chr22:14671972-14672091
Coord C2 exon
chr22:14666280-14666408
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTGTTTCCCCTCAGAGT
3' ss Score
11.91
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTTTGCGGCAGGTAAAAGTGAGGTGTCCTGTTAATAACATCCAGTGTCTCGGGACCCGCAGATGTGTTCATTTCAGTAAACTTTGCGATGGAGTTCGAGACTGTGAAGACGGATACGACGAGGGTGTTCACTGCCGCG
Seq A exon
AGTTGGTGCGCAGCTGCCAGGAGCGGAGGTGTCAGTTTGACTGTGTGGTCATGAGAAACGGGACGTCCTGTTTCTGCGGGGAAGGTTTCGAGGTAGACGAGGACGGGAGAAGATGTCGAG
Seq C2 exon
ATCATGATGAATGCAGGGATTACGGGACATGCAGTCAGATCTGTATGAACACGCAGGGATCGTACAGATGCGCTTGCACAGATGGCTTCAGCCTGCAGGCCAACAGACGATCCTGCAAAGCCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004789-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=WD(100=84.8)
A:
PF126622=cEGF=PU(79.2=47.5)
C2:
PF126622=cEGF=PD(12.5=7.0),PF146701=FXa_inhibition=WD(100=81.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGGCAGGTAAAAGTGAGG
R:
GGCTTTGCAGGATCGTCTGTT
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]