MmuEX6101014 @ mm9
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41626365-41816298:-
Coord C1 exon
chr2:41816161-41816298
Coord A exon
chr2:41644478-41644597
Coord C2 exon
chr2:41626365-41626493
Length
120 bp
Sequences
Splice sites
3' ss Seq
CGACTTTTTTTTCTTTACAGAAT
3' ss Score
10.54
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTCCCGAGGAGGTGGAGATCAAGTGCCCCTTGAATCACATTGCTTGCCATGGCTCTAGCGCATGTGTCCATTTGTCAAAACTGTGCAACGGAGTGGTCGATTGCCCAGATGGCTTTGATGAAGGAGGGCATTGCCAGG
Seq A exon
AATTATTACCCAGTTGTCAGCAGTTGAATTGCCAGTTTAAATGTGCAATGGTCAGAAATGCTACAAGATGTTATTGCGAGGATGGATTTGAAGTAGCAGAAGATGGAAGAAGCTGTAAAG
Seq C2 exon
ATCAAGATGAATGCAGCATTTATGGTATTTGCAGCCAGACCTGCAAGAACACATATGGGTCCTATGCTTGCAGCTGCGTGGAAGGCTATATAATGCAGTCAGACAACAGATCTTGCAAGGTCAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'4-4,'4-3,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=WD(100=83.0)
A:
PF126622=cEGF=PU(82.6=46.3)
C2:
PF126622=cEGF=PD(13.0=6.8),PF146701=FXa_inhibition=WD(100=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGAGGTGGAGATCAAGT
R:
GCAAGATCTGTTGTCTGACTGC
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: