GgaEX6043144 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31607205-31616333:-
Coord C1 exon
chr7:31616214-31616333
Coord A exon
chr7:31614866-31614994
Coord C2 exon
chr7:31607205-31607462
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTACATCCCTTTAGATT
3' ss Score
9.12
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AATTGCTACCCAGGTGCCAACAGATGAATTGCCAATATAAATGTGCCATTACCAGGAATGGCAGCAAGTGTTACTGTGGAGATGGCTATGAAACAAGCAATGATGGAAGAAGCTGCACAG
Seq A exon
ATTTGAATGAATGTAATACATATGGAAGCTGCAGCCAGATGTGTGTGAATACGGATGGATCTTACACCTGTAGCTGTGTAGAGGGTTACGTTCTTCAGCCTGATAACAAATCTTGCAAGGCCAAAAATG
Seq C2 exon
AGCCTGCTGATAGACCTCCTTTTCTTCTGATTGCAAACTCTGAAACAATAGAGGTATTACATCTTAATGGAAGCAAAGTGTCTGCCCGAACTCCTGTAAAAGGATCTTCAGTTTTGACACTAGATTATAGCTACAGAGAGGACACTATTTGTTGGATTGAATCAAGGGATCTTGCAAGTCAGCTGAAATGTACGAAGATAACAAAAGCCGGAAAGTTAACAGACGAGTGGATAATAAACGTTGTGCAGTATCTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'7-31,'7-21,11-31=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=48.8)
A:
PF126622=cEGF=PD(12.5=6.8),PF146701=FXa_inhibition=WD(100=81.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATATTTGGGAGGTTGGATAAAC
R:
TGGTACAAGTCTGCACGTAAGC
Band lengths:
170-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]