HsaEX6015721 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:141229183-141254641:-
Coord C1 exon
chr2:141254522-141254641
Coord A exon
chr2:141247226-141247354
Coord C2 exon
chr2:141229183-141229440
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATGCCAATTTTCCTTTTTAGATC
3' ss Score
10.79
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AACTGTTATCCAATTGCCAACAGCTGAATTGTCAGTATAAATGTACAATGGTCAGAAATAGTACAAGATGTTACTGTGAGGATGGATTCGAAATAACAGAAGATGGGAGAAGCTGTAAAG
Seq A exon
ATCAAGATGAATGTGCTGTTTATGGTACATGCAGCCAGACCTGCAGAAACACACATGGATCCTACACTTGCAGTTGTGTGGAAGGCTACCTAATGCAGCCAGACAACAGATCTTGCAAGGCTAAAATTG
Seq C2 exon
AACCTACAGATAGACCACCTATACTATTAATTGCAAATTTTGAAACAATTGAGGTTTTCTATCTTAATGGAAGTAAAATGGCAACTCTAAGCTCAGTCAATGGAAATGAAATTCATACTCTGGATTTTATTTATAATGAAGATATGATTTGTTGGATTGAATCAAGAGAATCTTCAAATCAACTCAAATGTATCCAGATAACAAAAGCAGGAGGATTAACAGATGAATGGACAATCAATATTCTTCAATCCTTCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'2-30,'2-28,13-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=48.8)
A:
PF126622=cEGF=PD(12.5=6.8),PF146701=FXa_inhibition=WD(100=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTACTGCCATCTGCCCCAG
R:
ACTTTTCCCCCAAGATATATTGATCA
Band lengths:
187-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains