HsaEX6015722 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:141212200-141231605:-
Coord C1 exon
chr2:141231505-141231605
Coord A exon
chr2:141229183-141229440
Coord C2 exon
chr2:141212200-141212300
Length
258 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTATTTTATTCCAGAAC
3' ss Score
9.89
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGGGAATGTGCTAAGGGAACGTGCTACGTGCTATATAAGCTGCATGCTTTTCCCAAGTGGTAGTGATTCTCCAGGCTGCAGCCACTGGACCATCTCTGTGT
Seq A exon
AACCTACAGATAGACCACCTATACTATTAATTGCAAATTTTGAAACAATTGAGGTTTTCTATCTTAATGGAAGTAAAATGGCAACTCTAAGCTCAGTCAATGGAAATGAAATTCATACTCTGGATTTTATTTATAATGAAGATATGATTTGTTGGATTGAATCAAGAGAATCTTCAAATCAACTCAAATGTATCCAGATAACAAAAGCAGGAGGATTAACAGATGAATGGACAATCAATATTCTTCAATCCTTCCACA
Seq C2 exon
TCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTAGACTTTTTGATCAATATATCTTGGGGGAAAAGTAAATTTTATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'14-30,'14-29,15-30
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAATGTGCTAAGGGAACG
R:
ACTTTTCCCCCAAGATATATTGATCA
Band lengths:
189-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains