MmuEX6101016 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41670901-41770973:-
Coord C1 exon
chr2:41770845-41770973
Coord A exon
chr2:41728553-41728810
Coord C2 exon
chr2:41670901-41671063
Length
258 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTTTTTTTTCTAGAAC
3' ss Score
11.35
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATCAAGATGAATGCAGCATTTATGGTATTTGCAGCCAGACCTGCAAGAACACATATGGGTCCTATGCTTGCAGCTGCGTGGAAGGCTATATAATGCAGTCAGACAACAGATCTTGCAAGGTCAAACATG
Seq A exon
AACCCACAGATAAGGCACCAATGTTATTAATTTCAAGTCTTGAAACAATTGAGCTCTTCTACATCAATGGAAGTAAAATGACAACTCTAAGCTCAGCCAACAGAAATGAAATCCATACGCTAGATTTTATTTATAGTGAAGAAATGATTTGCTGGATTGAATCAAGAGAGTCTTCTAATCAACTCAAATGTGGCCAGATAACAAAAGCAGGAAGATTGACAGATCAAAGGATAATTAACAGTCTTCAATCCTTCCAAA
Seq C2 exon
ATGTGGAACAAATGGCATTTGACTGGCTTACCAGAAATATCTACTTCGTGGACCATGTCAGTGACCGGATCTTTGTTTGTAATTTCAATGGCTCTGTGTGTGTCACTCTGATTGAATCGGAGCTTCACAATCCTAAGGCCATAGCAGCAGATCCCATCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'18-16,'18-15,19-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=79.5)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=74.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGATGAATGCAGCATTTATGGT
R:
CCTGCGATGGGATCTGCTG
Band lengths:
292-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types