HsaEX6015722 @ hg19
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693]
Coordinates
chr2:141945990-142004923:-
Coord C1 exon
chr2:142004795-142004923
Coord A exon
chr2:141986752-141987009
Coord C2 exon
chr2:141945990-141946152
Length
258 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTATTTTATTCCAGAAC
3' ss Score
9.89
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATCAAGATGAATGTGCTGTTTATGGTACATGCAGCCAGACCTGCAGAAACACACATGGATCCTACACTTGCAGTTGTGTGGAAGGCTACCTAATGCAGCCAGACAACAGATCTTGCAAGGCTAAAATTG
Seq A exon
AACCTACAGATAGACCACCTATACTATTAATTGCAAATTTTGAAACAATTGAGGTTTTCTATCTTAATGGAAGTAAAATGGCAACTCTAAGCTCAGTCAATGGAAATGAAATTCATACTCTGGATTTTATTTATAATGAAGATATGATTTGTTGGATTGAATCAAGAGAATCTTCAAATCAACTCAAATGTATCCAGATAACAAAAGCAGGAGGATTAACAGATGAATGGACAATCAATATTCTTCAATCCTTCCACA
Seq C2 exon
ATGTGCAACAAATGGCGATTGACTGGCTCACTCGAAATCTCTATTTTGTGGACCATGTCGGTGACCGGATCTTTGTTTGTAATTCCAACGGTTCTGTATGTGTCACCCTGATTGATCTGGAGCTTCACAATCCTAAAGCAATAGCAGTAGATCCAATAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=79.5)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGATGAATGTGCTGTTTATGGT
R:
CCTGCTATTGGATCTACTGCTATTGC
Band lengths:
292-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)