GgaEX1033876 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33705712-33731638:-
Coord C1 exon
chr7:33731510-33731638
Coord A exon
chr7:33723849-33724106
Coord C2 exon
chr7:33705712-33705874
Length
258 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGATTTGTTTTCAGAGC
3' ss Score
10.62
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTGAATGAATGTAATACATATGGAAGCTGCAGCCAGATGTGTGTGAATACGGATGGATCTTACACCTGTAGCTGTGTAGAGGGTTACGTTCTTCAGCCTGATAACAAATCTTGCAAGGCCAAAAATG
Seq A exon
AGCCTGCTGATAGACCTCCTTTTCTTCTGATTGCAAACTCTGAAACAATAGAGGTATTACATCTTAATGGAAGCAAAGTGTCTGCCCGAACTCCTGTAAAAGGATCTTCAGTTTTGACACTAGATTATAGCTACAGAGAGGACACTATTTGTTGGATTGAATCAAGGGATCTTGCAAGTCAGCTGAAATGTACGAAGATAACAAAAGCCGGAAAGTTAACAGACGAGTGGATAATAAACGTTGTGCAGTATCTTCACA
Seq C2 exon
ATGTGCAGCAAATAGCAATTGATTGGATCACTGGAAACTTTTACTTTCTGGATCATGTCAGTGATAGGATCTTCGTTTGCAACCAGAACGGAACGGTGTGCATTACACTCATTGAGCTGGACCTCAGTAACCCTAAGGCCATAGCTGTTGATCCAACCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'8-18,'8-15,11-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=6.8),PF146701=FXa_inhibition=WD(100=81.8)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTAATACATATGGAAGCTGCA
R:
CCTGAGGTTGGATCAACAGCT
Band lengths:
285-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]