GgaEX6043155 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31513352-31518801:-
Coord C1 exon
chr7:31518556-31518801
Coord A exon
chr7:31514237-31514434
Coord C2 exon
chr7:31513352-31513556
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTGTAATCTTCTGCTTCCAGATC
3' ss Score
9.03
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ATGAATGTTCGCTTAATAATGGTGGATGTAGTCATCAATGTTCCGTGGTTCCTGGAGGAAGAATTGTGTGCTCATGCCCCTCAGGATTCAATCTCAGTGTAGACAACAAAACTTGTGAAATTATGGATTATTGCACCAAGCACCTTAAGTGTAGTCAAGTATGTGAACAACATAAAAATAATGTGAAATGCTCATGTTATGAAGGCTGGAAGCTCAGTAAAGATGGAGAAAATTGCATTAGTACTG
Seq A exon
ATCCATTTGAAGCTTTCATAATTTTTTCTATTCGACATGAGATCAGAAAAATTGATCTTCACAAACGTGACTACAGCCTTTTAGTTCCTGGTTTAAGAAATACGATAGCACTTGATTTTCATTTCAGTCAGAGTTTATTGTACTGGACAGATGTGGTGGAGGACAAAATTTACAGAGGCAAGCTTTCTGATACTGGAG
Seq C2 exon
GTGTAAGTGCTATTGAGGTGATAGTACAACATGGCCTGGCCACACCTGAAGGTCTTACTGTAGACTGGATTGCGGGAAACATATACTGGATAGACAGCAATCTGGACCAAATAGAAGTTGCAAAGCTAGATGGTACTCTGAGAACAACGTTAATAGCAGGAGCTATGGAACATCCAAGAGCTATTGCTTTGGATCCCAGATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'35-55,'35-54,36-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(4.7=2.4),PF146701=FXa_inhibition=WD(100=44.6),PF146701=FXa_inhibition=WD(100=41.0)
A:
PF0005812=Ldl_recept_b=PU(48.9=32.8)
C2:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCTCAGGATTCAATCTCA
R:
TCCCGCAATCCAGTCTACAGT
Band lengths:
249-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]