GgaEX6043208 @ galGal3
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
NA
Coordinates
chr7:36196278-36198467:-
Coord C1 exon
chr7:36198391-36198467
Coord A exon
chr7:36197485-36197575
Coord C2 exon
chr7:36196278-36196353
Length
91 bp
Sequences
Splice sites
3' ss Seq
TATTGCTGTTTGCATCACAGGCA
3' ss Score
7.66
5' ss Seq
GCGGTATGG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGCAGAAAATGTTACGTGAAAGACTGTGTCACCATCGTGCTATGGGGAAATTGTTTGGGGTTGATCAGCAGTACAA
Seq A exon
GCATCTGCTGGAACTGCTGAAGCAAACTACAGTTTGTGGAGAAAGTAATTCTGCCCTCATTATTGGACCCCGTGGATCAGGAAAGACTGCG
Seq C2 exon
TTATTAAATCGTGTCTTAAAAGACCTCAGAGAAATGAAACAAGTTAAAGAGAACCTCTTGGAAGTTCATCTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448-'2-8,'2-7,3-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(5.8=34.6)
A:
PF131911=AAA_16=FE(19.4=100)
C2:
PF131911=AAA_16=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAAAATGTTACGTGAAAGACT
R:
TTCAGATGAACTTCCAAGAGGT
Band lengths:
151-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]