RnoEX6016716 @ rn6
Exon Skipping
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33058918-33062553:-
Coord C1 exon
chr3:33062477-33062553
Coord A exon
chr3:33061810-33061900
Coord C2 exon
chr3:33058918-33058993
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCCATATCATTTTAGGCA
3' ss Score
9.4
5' ss Seq
ACGGTAAAA
5' ss Score
6.53
Exon sequences
Seq C1 exon
GTACAAAGAATTTTACGTGAAAGGTTTTGTCATCATACTCCTCATAGCAACCTATTTGGAGTGCAAGTACAATACAA
Seq A exon
GCATTTAATTGAGCTACTCAAAAGAACTGCTATCTATGGAGAAAGTAATTCTTTACTCATTGTTGGACCACGAGGATCAGGAAAGACCACG
Seq C2 exon
TTATTAAATCATGCCTTGAAAGAGCTCATGCAAATAGGAGACATGAGTGAAAATGTGTTACAAGTTCACTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021-'9-9,'9-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(5.8=34.6)
A:
PF131911=AAA_16=FE(19.4=100)
C2:
PF131911=AAA_16=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGAATTTTACGTGAAAGGTTTT
R:
GTGAACTTGTAACACATTTTCACTCA
Band lengths:
144-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]