HsaEX0044832 @ hg38
Exon Skipping
Gene
ENSG00000115947 | ORC4
Description
origin recognition complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr2:147958791-147973524:-
Coord C1 exon
chr2:147973448-147973524
Coord A exon
chr2:147972739-147972829
Coord C2 exon
chr2:147958791-147958866
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCCTATTTATATCATTTTAGACA
3' ss Score
7.45
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GTACAAAGAATTTTACGTGAAAGATTTTGTCGTCAGAGTCCACATAGTAACCTATTTGGAGTGCAAGTACAATACAA
Seq A exon
ACACTTAAGTGAGCTGCTGAAAAGAACTGCTCTCCATGGAGAGAGTAACTCTGTCCTTATTATCGGACCCCGAGGATCAGGAAAAACTATG
Seq C2 exon
TTAATAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATGTATTACAAGTTCACTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947-'14-24,'14-19,15-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(10.0=34.6)
A:
PF131911=AAA_16=FE(19.4=100)
C2:
PF131911=AAA_16=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACGTGAAAGATTTTGTCGTCAGA
R:
ATTTTCACTCACTTCTTCTATTTCCA
Band lengths:
119-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development