DreEX6019740 @ danRer10
Exon Skipping
Gene
ENSDARG00000101161 | orc4
Description
origin recognition complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2224]
Coordinates
chr6:903987-906717:-
Coord C1 exon
chr6:906641-906717
Coord A exon
chr6:906013-906103
Coord C2 exon
chr6:903987-904062
Length
91 bp
Sequences
Splice sites
3' ss Seq
AGCAGTGTGTGTGTGTTCAGGCA
3' ss Score
5.09
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
GTTCAGGAGCTCCTGCGGGAGAGATTGTGTCATCAGAAGTTGCCAGATCAGCCCATAGGCCTCGACTCACAGTACAA
Seq A exon
GCACCTGCTGGAGCTGCTGAGACGAACTGCTGTTCATGGAGAAAGTAACTCGGTTCTCATCGTCGGTCCTCGAGGATCTGGTAAAACTATG
Seq C2 exon
TTGTTGGGTTGTGTTCTCCGAGAGCTCATGAGTCTGAAGGAGGTGCAGAAGAATGTTCTGCTGGTGGAGCTGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101161-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PU(10.8=34.6)
A:
PF131911=AAA_16=FE(25.2=100)
C2:
PF131911=AAA_16=FE(21.0=100),PF137641=E3_UbLigase_R4=PU(25.0=69.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCGGGAGAGATTGTGTC
R:
TCCACCAGCAGAACATTCTTCT
Band lengths:
135-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]