GgaEX6043241 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36907419-36908146:-
Coord C1 exon
chr7:36908042-36908146
Coord A exon
chr7:36907618-36907722
Coord C2 exon
chr7:36907419-36907523
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGCTGATCTTTCTGTCCAGGTG
3' ss Score
10.2
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTAAATACCGCATGGCTGGTGAAGCTGCTCGAACTATTTGCCATGTTGATGAAAAGGCTTGGGATATAGAACATGCAAAGAAGGTATCTCAGCAAGTGAGCAAG
Seq A exon
GTGTTATATAAACAGAACTGGGAGGAGAATAAGGACAAGTACTTACTTCCCCCTGATGCCCCAGAGCTTGTAAATGCAATAAAAAATACAGCAATGTTCAGTAAG
Seq C2 exon
AAACTCTATACAGAAGACTGGGAAGGAGACAAAACGTTGTTCTATCCGTACAATGACAGTCCAGAACTCAGAAGGGTGGCACAGGCTCAAAAAGCTCTGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(50.0=37.1)
A:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACCGCATGGCTGGTGAAG
R:
CTTTTTGAGCCTGTGCCACCC
Band lengths:
195-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]