MmuEX6101207 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52324963-52326774:-
Coord C1 exon
chr2:52326670-52326774
Coord A exon
chr2:52325697-52325801
Coord C2 exon
chr2:52324963-52325067
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCCATCTGTTCTCTCTCTAGGTT
3' ss Score
13.55
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTAAGTATCGAATGGATGGAGATGTTGCTAAAACTATCTGTCATGTGGATGAAAAAGCAAAAGACATTGAACATGCTAAGAAAGTGTCGCAGCAAGTCAGCAAG
Seq A exon
GTTTTATACAAGCAGAACTGGGAAGACACCAAGGATAAGTACCTGCTTCCCCCTGATGCCCCTGAACTTGTCCAAGCCGTCAAGAACACAGCCATGTTCAGTAAG
Seq C2 exon
AAACTGTACACTGAAGACTGGGAAGCAGACAAGGCATTGTTTTATCCCTATAATGACAGTCCGGAGCTGAGAAGGGTAGCCCAGGCCCAGAAAGCACTGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'10-18,'10-17,11-18=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.034 C2=0.063
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
A:
PF0088013=Nebulin=PD(39.3=31.4),PF133551=DUF4101=PU(34.7=97.1),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF133551=DUF4101=FE(34.7=100),PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACAGAATCGAAGGAAGAGAACT
R:
GCACCCAAGTTGATGTTCTGC
Band lengths:
226-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types