MmuEX6101208 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52319634-52367530:-
Coord C1 exon
chr2:52367404-52367530
Coord A exon
chr2:52324963-52325067
Coord C2 exon
chr2:52319634-52319738
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTCTTCTCTGATTAGAAA
3' ss Score
8.02
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATTCACAGAATCGAAGGAAGAGAACTGTGTGTCCTCTCTCTTTTCCTTCCCCGGAGGCGAGATGGAGAGCGAGTCAATGCCAATGCCTGGGATTTGTCTCACAACTTCAAACAGATTTGCAAAGCTG
Seq A exon
AAACTGTACACTGAAGACTGGGAAGCAGACAAGGCATTGTTTTATCCCTATAATGACAGTCCGGAGCTGAGAAGGGTAGCCCAGGCCCAGAAAGCACTGAGTGAT
Seq C2 exon
ATTGCCTACAAAAAAGGACTCACTGAGCAGCAAACTCAGTTCACGTCCCTGCCTGATCCTCCTGAGGTCGAATTTGCCAAGAAAGTAACCAACCAAGTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'11-19,'11-18,12-19=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.063 C2=0.459
Domain overlap (PFAM):
C1:
NA
A:
PF133551=DUF4101=FE(34.7=100),PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
C2:
PF0088013=Nebulin=PD(35.7=28.6),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCGAAGGAAGAGAACTGTGTG
R:
CTTGCTCACTTGGTTGGTTACT
Band lengths:
226-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types