DreEX6036122 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23068699-23069463:-
Coord C1 exon
chr9:23069359-23069463
Coord A exon
chr9:23069141-23069245
Coord C2 exon
chr9:23068699-23068803
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGATTGAATATTCCTATCAGAAA
3' ss Score
4.12
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
GTTCTGTACAGGCAGAAATGGGATGAGACTAAGGATAAGTACCTGCTCCCTCCTGACGCCCCTGAGCTTGTTCTTGCTGTGAAGAATGCAGCAAATTACAGCAAG
Seq A exon
AAACTGTATACAGAGGTGTGGGATGAGGAGAAGACCATGTACTATCCGTACAGTGACAGCCCAGAGCTGCGCAGGGTTGCCAAAGCCCAAAAAGACCTCAGTGAT
Seq C2 exon
ATTGTCTACAAGAAAGGTCACGATGAGCGCAAGGCAAAGTACACTTCACTGGCTGATCCTCCGGAGGTGGAGCTGGCCAAGAAAAACTTTGCCAATCGTAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTACAGGCAGAAATGGGA
R:
ACGATTGGCAAAGTTTTTCTTGGC
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]