GgaEX6043242 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36906638-36907722:-
Coord C1 exon
chr7:36907618-36907722
Coord A exon
chr7:36907419-36907523
Coord C2 exon
chr7:36906638-36906742
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGGCATTTTTCTGTTTTAAGAAA
3' ss Score
6.42
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGTTATATAAACAGAACTGGGAGGAGAATAAGGACAAGTACTTACTTCCCCCTGATGCCCCAGAGCTTGTAAATGCAATAAAAAATACAGCAATGTTCAGTAAG
Seq A exon
AAACTCTATACAGAAGACTGGGAAGGAGACAAAACGTTGTTCTATCCGTACAATGACAGTCCAGAACTCAGAAGGGTGGCACAGGCTCAAAAAGCTCTGAGTGAT
Seq C2 exon
ATTGTCTACAAAAAAGGGCACGATGAACGAAAATCTAAGTATACTTCTCTGCCAGATCCACCTGATGTGGAGCAAGCCAAGAAAGTGACAAGGCAGCTGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.457
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACAGAACTGGGAGGAGAATAAGG
R:
ATCACTCAGCTGCCTTGTCAC
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]