MmuEX1018332 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52313776-52325067:-
Coord C1 exon
chr2:52324963-52325067
Coord A exon
chr2:52323652-52323697
Coord C2 exon
chr2:52313776-52313880
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGAGTGAATGGATTGTATAGCAA
3' ss Score
0.08
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAACTGTACACTGAAGACTGGGAAGCAGACAAGGCATTGTTTTATCCCTATAATGACAGTCCGGAGCTGAGAAGGGTAGCCCAGGCCCAGAAAGCACTGAGTGAT
Seq A exon
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAG
Seq C2 exon
CAAAAATATAAAGAAGACTATGAGAAGAAAGTCAAAGGAAAATGGAGTGAGACACCATGCTTTGAAATTGCAACAGCCAGAATGAATGCTGACAATCTCAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'12-21,'12-19,13-21
Average complexity
ME(19_13-20_14[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=1.000 C2=0.057
Domain overlap (PFAM):
C1:
PF133551=DUF4101=FE(34.7=100),PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
A:
NO
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
Main Inclusion Isoform:
ENSMUST00000036934fB13495
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGTCCGGAGCTGAGAA
R:
GCATTCATTCTGGCTGTTGCA
Band lengths:
142-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types