MmuEX6101204 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52326936-52330850:-
Coord C1 exon
chr2:52330809-52330850
Coord A exon
chr2:52328718-52328918
Coord C2 exon
chr2:52326936-52327043
Length
201 bp
Sequences
Splice sites
3' ss Seq
GCCACGTGTTTTATTTTCAGACA
3' ss Score
8.16
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TACTACACAGAGGAGACAGTTTACGAAGAGGTGCCAGGAGAG
Seq A exon
ACAATTACAGAAGTCTATGAGACCACAACGACAAGGACATCGGACTATGGCCAATCAGAAACTGCCACACCAGCGCTGGCACAGCCACAACCAGCAAAGCCGGTGGAGCGGAAGAAGGTCATCCGAAAGAAGGTGGACTCGTCCAAGTTCATGACCCCCTACATTCAACACAGTCAGAAAATGCAGGATCTTTTCAGCTCA
Seq C2 exon
AATAAATACAAAGAGAACTATGAGAAAGCAAAGGGACAGCCATACGCCATCACAAGTGATACTCCAGAACTTCGCAGAATCAAGAAAGTCCAGGATCAACTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'6-15,'6-14,8-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.627 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
PF0088013=Nebulin=PU(55.2=23.9)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACACAGAGGAGACAGTTTACGA
R:
CTCACTGAGTTGATCCTGGACT
Band lengths:
149-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types