GgaEX6043238 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36908909-36912191:-
Coord C1 exon
chr7:36912147-36912191
Coord A exon
chr7:36909981-36910184
Coord C2 exon
chr7:36908909-36909016
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCTCTATTCCCAGGTG
3' ss Score
11.82
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
TACTACATTGAGGAGACAATTGTTGAGGAGGGTGAACCATATGAG
Seq A exon
GTGGTCACTGAGATCACTGACAGCACTAGCACAGAATTCACAGGTCCTACAACCATCACCCGTACGATTGAGTATGAAAAAACTTCTGGTGAGGGTGCAGCAACTCCAGTCAGGAAGAAGACGATACGGACAAAAATGGACACTTCCAAGTTCTTGACACCTTACCTGCAGCACAGTAATAAAATGAAGGACCTGTTCAGTGAG
Seq C2 exon
AACAAGTACAAAGAAAAATTTAATAAGGAAAGAGGAAAGCCATATGCTTCCACAATTGATACCCCAGAAATCCGGAGAATCAAGAAAGTGCAAGAGCAGCTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'4-4,'4-3,5-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.603 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
PF0088013=Nebulin=PU(53.6=22.1)
C2:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGAGGAGACAATTGTTGAGGA
R:
CTCACTGAGCTGCTCTTGCAC
Band lengths:
149-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]