BtaEX6009847 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44550623-44554339:+
Coord C1 exon
chr2:44550623-44550664
Coord A exon
chr2:44552157-44552357
Coord C2 exon
chr2:44554232-44554339
Length
201 bp
Sequences
Splice sites
3' ss Seq
ACTTCATGCCAAATTTTCAGACA
3' ss Score
5.26
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TATTACACAGAGGAGACAGTCTATGAAGAGGTGCCAGGGGAG
Seq A exon
ACAAGAACAAGATTCTATGAAACTACGACAACAAGGACATCTGACTATGAGCAATCAGAAACCTCCAGACCGGCCCTGGCACAGCCAGTACCTGAAAAGCCGGTGGAGAGGAAGAGGGTTATTCGAAAGAAGGTGGACCCTTCAAAGTTCATGACCCCCTACATTGCACACAGTCAGAAAATGCAGAATCTCTTTAGCACA
Seq C2 exon
AATAAATACAAGGAGAACTATGAGAAAGCAAAAGGGAAGCCATACGCCATCACAACCGATACCCCAGAACTTCGCAGAATCAAGAAAGTTCAAGATCAACTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.642 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
PF0088013=Nebulin=PU(55.2=23.9)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(57.1=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACACAGAGGAGACAGTCTATGA
R:
CTCACTGAGTTGATCTTGAACTTTCT
Band lengths:
148-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]