MmuEX6101204 @ mm9
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52182456-52186370:-
Coord C1 exon
chr2:52186329-52186370
Coord A exon
chr2:52184238-52184438
Coord C2 exon
chr2:52182456-52182563
Length
201 bp
Sequences
Splice sites
3' ss Seq
GCCACGTGTTTTATTTTCAGACA
3' ss Score
8.16
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TACTACACAGAGGAGACAGTTTACGAAGAGGTGCCAGGAGAG
Seq A exon
ACAATTACAGAAGTCTATGAGACCACAACGACAAGGACATCGGACTATGGCCAATCAGAAACTGCCACACCAGCGCTGGCACAGCCACAACCAGCAAAGCCGGTGGAGCGGAAGAAGGTCATCCGAAAGAAGGTGGACTCGTCCAAGTTCATGACCCCCTACATTCAACACAGTCAGAAAATGCAGGATCTTTTCAGCTCA
Seq C2 exon
AATAAATACAAAGAGAACTATGAGAAAGCAAAGGGACAGCCATACGCCATCACAAGTGATACTCCAGAACTTCGCAGAATCAAGAAAGTCCAGGATCAACTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.627 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
PF0088013=Nebulin=PU(55.2=23.9)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACACAGAGGAGACAGTTTACGA
R:
CTCACTGAGTTGATCCTGGACT
Band lengths:
149-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: