RnoEX6016769 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37847322-37850926:-
Coord C1 exon
chr3:37850885-37850926
Coord A exon
chr3:37849092-37849292
Coord C2 exon
chr3:37847322-37847429
Length
201 bp
Sequences
Splice sites
3' ss Seq
CCACATGTTTCATTTTTCAGACA
3' ss Score
8.62
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TACTACACCGAGGAGACGGTGTACGAGGAGGTGCCAGGAGAG
Seq A exon
ACAATTACAGAAATCTATGAAACCACAACTACAAGGACATCTGACTATGACCAATCAGAAACTTCCACACCAGCGCTGGCACAGCCACAACCAGCAAAACCGGTGGAGCGGAAGAAGGTCATTCGAAAGAAGGTGGACACGTCCAAGTTCATGACCCCCTACATAGAGCACAGTCAGAAAATGCAGGGTCTTTTCAGCCCA
Seq C2 exon
AATAAATACAAAGAGAACTACGAGAAAGCAAAGGGACAGCCATACGCCATCACAAGTGATACTCCAGAACTTCGCAGAATCAAGAAAGTCCAGGATCAACTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.657 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
PF093165=Cmyb_C=PU(38.8=92.5),PF0088013=Nebulin=PU(55.2=23.9)
C2:
PF093165=Cmyb_C=FE(21.9=100),PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGAGACGGTGTACG
R:
CTCACTGAGTTGATCCTGGACT
Band lengths:
143-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]