GgaEX6043291 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36847381-36848616:-
Coord C1 exon
chr7:36848512-36848616
Coord A exon
chr7:36847780-36847884
Coord C2 exon
chr7:36847381-36847488
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTGAATTTCTCTCTGCAGATC
3' ss Score
11.64
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTGGTGTACAAGGATGATCTTAACTGGCTGAAAGGCATTGGCTGCTTTGTTTGGGACACTCCTGAGATTCTCCATGCTAAACATGCCTACGACCTTCGCAGTGAT
Seq A exon
ATCAAGTACAAATCTGATGCAGACAAGATGAAGAGCAAATACACTGTGGTCATGGACACTCCCGTCTATGTCCAGAATATCCTCAGTGGCTTGAATGCCAGTGAA
Seq C2 exon
GTTATCTATCGTGGTGACTACTTAAAAAAAGTTAGAGGCAAAATGATTCCTACTGACAAAACAGTAGATTTGCAGCGGGCACATCATGCAAACAAGATACAGAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'97-100,'97-99,98-100=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4)
C2:
PF0088013=Nebulin=PU(61.5=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTACAAGGATGATCTTAACTGG
R:
TCACTCTGTATCTTGTTTGCATGA
Band lengths:
211-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]