RnoEX6016840 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37712170-37714026:-
Coord C1 exon
chr3:37713922-37714026
Coord A exon
chr3:37713238-37713342
Coord C2 exon
chr3:37712170-37712277
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTGCTTCCTGTCAGATC
3' ss Score
10.97
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATTGTGTACAAGGATGACCTCACCTGGCTGAAGGGCATTGGTTGCTACGTCTGGGACACTCCTGAAATTCTCCATGCAAAACATGCTTATGATCTACGCAACGAT
Seq A exon
ATCAAGTATAAAGCTCATGTGCAGAAGACGAGGAATGACTACAAGCTGGTGACTGACACACCGGTGTACGTCCAGGCCGTCAAGAGTGGGAAGCAGCTCAGTGAT
Seq C2 exon
GCTGTCTACCACTATGACTACATACACAGTGTCAGAGGCAAAGTGGCCCCAACTACCAAGACTGTGGATCTGGACCGGGCCCTCCACGCATATAAGCTTCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'109-117,'109-116,110-117=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
C2:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(64.0=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGACCTCACCTGGCTG
R:
TCACTCTGAAGCTTATATGCGTGG
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]