DreEX0050047 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23031672-23032373:-
Coord C1 exon
chr9:23032269-23032373
Coord A exon
chr9:23032075-23032179
Coord C2 exon
chr9:23031672-23031779
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTGATTTTCTTTTTCAGAAC
3' ss Score
11.14
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
ATTTTCTACAAAGATGACCTCAACTGGCTGAAGGGAGCTGGCTGCTATGCTTGGGACACTCCTGAGATTCTTCGTGTCAAGCAAGCGATGAAACTGCAGAGTGAC
Seq A exon
AACTTGTACAGAGCTAAAGGAATCGAGCACTTTAAGCAGTACACTGTTGTGATGGACACGCCAGTCTATGAAACATGCAAACAGAGCGCTAAGAACTTGAGTGAG
Seq C2 exon
AACTTCTACAAAGAGGCCAATAAGTCATTTATGCCCACTGGATACTCTCTGCCTTACGACACTCCACTCAACAAACAAGCCAAGGCCAACAGCATCGTCACCAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630_MULTIEX3-7/26=6-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(61.5=45.7)
A:
PF0088013=Nebulin=PD(30.8=22.9),PF0088013=Nebulin=PU(59.3=45.7)
C2:
PF0088013=Nebulin=PD(33.3=25.0),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTACAAAGATGACCTCAACTGGC
R:
ATTGCTGGTGACGATGCTGTT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]