GgaEX6043298 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36841719-36843394:-
Coord C1 exon
chr7:36843290-36843394
Coord A exon
chr7:36842763-36842867
Coord C2 exon
chr7:36841719-36841823
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTTTTATTATTTCTTTTAGACA
3' ss Score
8.4
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
TATTTGTATGTGGCACTTGCCACGAAAGAGAGACCTCATCACCATGCTGGTAATCAGACTCCAGCCTTCACACATGCCAGGCATGTAAAAGACATGGTCAGTGAG
Seq A exon
ACAAAATATAAGATCCAGTATGAGAAGATGAAGGACAAATACACACCAGTCCTTGACACACCAATCTTGATCAGAGCCAAGAGAGCATACCTGAATGCCAGTGAT
Seq C2 exon
TTGCGCTACAAAGAAACCTTTGAGAACACAAAGGGGAAATACCACACAGTAAAAGATGCTTTGGATATTGTCTATCATCGAAAAGTCACTGATGATATTAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'110-110,'110-109,111-110=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTGCCACGAAAGAGAGA
R:
TGCTAATATCATCAGTGACTTTTCGA
Band lengths:
196-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]