RnoEX6016848 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37702616-37705352:-
Coord C1 exon
chr3:37705248-37705352
Coord A exon
chr3:37704702-37704806
Coord C2 exon
chr3:37702616-37702720
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTCTCTACCTTAGAAA
3' ss Score
10.01
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TATCTCTATGTTGAGCTTGCCACTAAAGAGAGACCCCACCACCACGCTGGGAATCAGACCACAGCCTTGCAACACGCTAAAGATGTGAAGGACATGGTCAGCGAG
Seq A exon
AAAAAGTACAAGATTCAGTATGAAAAGATGAAGGACAAGTATACACCAGTTGCAGACACGCCAATCCTCATCAGAGCCAAGAGAGCTTACTGGAACGCCAGCGAT
Seq C2 exon
CTTCGCTACAAAGAAACATTTCAAAAGACGAAAGGGAAATATCACACTGTGAAGGACGCCCTGGACATCGTGTATCATCGCAAAGTCACCGACGACATCAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'120-129,'120-127,121-129=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(18.2=11.4),PF0088013=Nebulin=PU(50.0=37.1)
A:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTCTATGTTGAGCTTGCCACT
R:
TTTACTGATGTCGTCGGTGACT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]