GgaEX6043512 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:2671599-2673305:-
Coord C1 exon
chr8:2673099-2673305
Coord A exon
chr8:2672421-2672597
Coord C2 exon
chr8:2671599-2671775
Length
177 bp
Sequences
Splice sites
3' ss Seq
AGGTTTGCATATCTTTTCAGAAG
3' ss Score
5.82
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGAAACCCTGTTCGCCACCACAACCTGTAGAACACGCTGATGATGTCAGGCTGGTAAATCAAAGCTTAAAAATGGAAAAAGAAGGCAAAACAGTTTATCTAGCTGGTGCTGTAGTGAAGTTCACTTGTCATTCTGGATTTGAGTTAGACGGACCATCGGAGATAAGTTGTTCTATGGGAAACTGGAGTTCATATCCTACGTGTTCAG
Seq A exon
AAGCATCATGTGGAAGTATTCCAAATGTTCCCAATTCTGCAATTGAAGGCAGAAACAAGGAAGCGTATGAGCCTGGTGAAACAATTCGCTACCAGTGTGATGAAGGATTCGAGGCTGTTGGTGTCCCGGAAATTATTTGCAGAAAAGGAAATTGGTCGACACCACCGTTCTGTGAAG
Seq C2 exon
ATGTTAGCTGTGAAGCCCCACCTGAAATTCACAACGCTTATATTACCAGCCCTCAACAGCAGAGGTATCTGCCTGGTGCTCGGGTACAGTATGAATGTGACAGCCATTTTCAGATTACAGCTGTAAATTATGTCACTTGTTCAAATGGACAATGGTTGCAGACACCAACTTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.133 C2=0.017
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.9)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAACCTGTAGAACACGC
R:
TCTGCTGTTGAGGGCTGGTAA
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]