RnoEX0020645 @ rn6
Exon Skipping
Gene
ENSRNOG00000030715 | Cfh
Description
complement factor H [Source:RGD Symbol;Acc:620428]
Coordinates
chr13:56991070-57002338:-
Coord C1 exon
chr13:57002165-57002338
Coord A exon
chr13:56992873-56993049
Coord C2 exon
chr13:56991070-56991246
Length
177 bp
Sequences
Splice sites
3' ss Seq
TACTCTTTTATTTTTTTAAGAAA
3' ss Score
6.19
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GAATACCTTGTGGACCCCCACCTTCAATTCCTCTTGGTATTGTTTCTCATGAACTAGAAAGTTACCAATATGGAGAGGAGGTTACATACAATTGTTCTGAAGGCTTTGGAATTGATGGACCAGCATTTATTAAATGTGTAGGAGGACAGTGGTCTGAACCACCCAAATGCATAA
Seq A exon
AAACTGATTGTGACAACTTGCCCACATTTGAAATTGCCAAACCGACAGAAAAGAAAAAAAAATCATACAGGTCAGGAGAACAAGTGACATTCAGATGTCCACCTCCGTATCGAATGGATGGCTCTGACATTGTCACATGTGTTAATACGAAGTGGATTGGACAGCCGGTATGCAAAG
Seq C2 exon
ATAATTCCTGTGTGAATCCACCACATGTGCCAAATGCTACTATACTAACAAGGCACAAGACTAAATATCCATCTGGTGACAAAGTACGTTATGACTGTAATAAACCTTTTGAATTATTTGGGGAAGTGGAAGTGATGTGCCAAAACGGGATTTGGACAGAACCACCGAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030715-'31-39,'31-37,34-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.059
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=PD(14.8=72.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAATTGATGGACCAGC
R:
GCATTTCGGTGGTTCTGTCCA
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]