GgaEX1000505 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:2670392-2672597:-
Coord C1 exon
chr8:2672421-2672597
Coord A exon
chr8:2671599-2671775
Coord C2 exon
chr8:2670392-2670568
Length
177 bp
Sequences
Splice sites
3' ss Seq
AAATGTGCCTCTCTTTTCAGATG
3' ss Score
11.07
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AAGCATCATGTGGAAGTATTCCAAATGTTCCCAATTCTGCAATTGAAGGCAGAAACAAGGAAGCGTATGAGCCTGGTGAAACAATTCGCTACCAGTGTGATGAAGGATTCGAGGCTGTTGGTGTCCCGGAAATTATTTGCAGAAAAGGAAATTGGTCGACACCACCGTTCTGTGAAG
Seq A exon
ATGTTAGCTGTGAAGCCCCACCTGAAATTCACAACGCTTATATTACCAGCCCTCAACAGCAGAGGTATCTGCCTGGTGCTCGGGTACAGTATGAATGTGACAGCCATTTTCAGATTACAGCTGTAAATTATGTCACTTGTTCAAATGGACAATGGTTGCAGACACCAACTTGCAAAG
Seq C2 exon
ATACGAGATGCGGACCTCCTCCAGAAATCTCTGGTGGTAAAGTTCAAGGTTTTAAAAAGTCAAGGTATTTGCCTGGGGAGACAGCTAAATATGAGTGCTGGAAAGGTTTCCGTATGACTGGAGCTTCCACCGTAAGCTGTCAGAACGGGACCTGGACAGAACTGCCCACGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431-'18-20,'18-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTATGAGCCTGGTGAAACA
R:
GACAGCTTACGGTGGAAGCTC
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]