MmuEX0021078 @ mm10
Exon Skipping
Gene
ENSMUSG00000070594 | Gm4788
Description
predicted gene 4788 [Source:MGI Symbol;Acc:MGI:3646434]
Coordinates
chr1:139701799-139732476:-
Coord C1 exon
chr1:139732303-139732476
Coord A exon
chr1:139731530-139731706
Coord C2 exon
chr1:139701799-139701981
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTCAAACTTTTTTTTTAGAAA
3' ss Score
8.56
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GACTTCCTTGTGGACCTCCACCTTCAATTCCTCTTGGTACTGTTTCTCTTGAGCTAGAGAGTTACCAACATGGGGAAGAGGTTACATACCATTGTTCTACAGGCTTTGGAATTGATGGACCAGCACTTATTAAATGTGAAGGAGGAAAGTGGTCTGACCCACCAAAATGCATAA
Seq A exon
AAACGGATTGTGACATTTTACCCACAATTGAAAATGCCATAATAAGAGGAAAGAACAAAAAATCATATAGGACAGGAGAACAAGTGACAGTCAGATGTCAATCTCCTTATCAAATGAATGGCTCAGACACTGTGACATGTATTAATGGCCGGTGGATTGGAAAGCCAGTATGCAAAG
Seq C2 exon
ACTCAAGAGGGAAATGTGGGCCTCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCATTACCAGAATATGAACCATTCTCATCAGTTGACTATCAGTGCCAGAAGTATTATCTCCTTAAGGGAAAGAAGACAATAACATGTAGAAATGGAAAGTGGTCTGAGCCACCAACCTGCTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070594-'15-21,'15-18,16-21
Average complexity
S
Mappability confidence:
60%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.008 C2=0.016
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=88.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATTGATGGACCAGCACT
R:
GTAAGCAGGTTGGTGGCTCAG
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types