MmuEX6027909 @ mm10
Exon Skipping
Gene
ENSMUSG00000070594 | Gm4788
Description
predicted gene 4788 [Source:MGI Symbol;Acc:MGI:3646434]
Coordinates
chr1:139622055-139774106:-
Coord C1 exon
chr1:139773930-139774106
Coord A exon
chr1:139754229-139754411
Coord C2 exon
chr1:139622055-139622231
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTCACTTTTTACCCTTTCAGAGA
3' ss Score
10.14
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
GGAAATGTGTTTTCCATTATGTGGAGAATGGACAATCTGCATACTGGGAAAAAATATATGTGCAGGGTCAGTCTTTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCAAAATGGTCAAGACACAATGACATGTACAGAGAATGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCA
Seq A exon
AGACATGTTCAGTATCAGATATAGAAATTGAGAATGGGTTTTTTTCTGAATCTTTTCGTACATATGCTCTAAATAGAGAAACATCCTATAGATGTAAACAGGGATATGTGACAAATACTGGAGAAACATCAGGATCAATAACTTGCCTTCAAAATGGATGGTCACCTCAACCCTCATGCATTA
Seq C2 exon
GAAAATGTGTTTTCCATTATGTGGAGAATGGAGAATCTTCACACTGGGAAAACAACTACGTGCAGGGTCAGTCTGTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCAAAATGATCAAGATATAATGACATGTACAGAGAATGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070594_MULTIEX1-3/17=2-15
Average complexity
C2
Mappability confidence:
81%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(3.1=3.3),PF0008415=Sushi=PD(94.8=91.7)
A:
PF0008415=Sushi=WD(100=93.5)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGAATGGACAATCTGCA
R:
GGACTTTTACAGACTGACCCTGC
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types