MmuEX6027910 @ mm10
Exon Skipping
Gene
ENSMUSG00000070594 | Gm4788
Description
predicted gene 4788 [Source:MGI Symbol;Acc:MGI:3646434]
Coordinates
chr1:139622055-139754411:-
Coord C1 exon
chr1:139754229-139754411
Coord A exon
chr1:139752974-139753150
Coord C2 exon
chr1:139622055-139622231
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTATTTTTCATTAGAGT
3' ss Score
8.21
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGACATGTTCAGTATCAGATATAGAAATTGAGAATGGGTTTTTTTCTGAATCTTTTCGTACATATGCTCTAAATAGAGAAACATCCTATAGATGTAAACAGGGATATGTGACAAATACTGGAGAAACATCAGGATCAATAACTTGCCTTCAAAATGGATGGTCACCTCAACCCTCATGCATTA
Seq A exon
AGTCTTGTGAAAGACCAGTATTTGAGAATTCTGTAACTAAGAATAATAGTACATGGTTTAAGCTCAATGACAAATTAGACTATGAATGTCTCATTGGATATGAAAATGAATATAAACATACCAAAGGCTCTATAACGTGTACTTATTATGGATGGTCTGATACGCCCTCATGTTATG
Seq C2 exon
GAAAATGTGTTTTCCATTATGTGGAGAATGGAGAATCTTCACACTGGGAAAACAACTACGTGCAGGGTCAGTCTGTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCAAAATGATCAAGATATAATGACATGTACAGAGAATGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070594_MULTIEX1-4/17=3-15
Average complexity
C3
Mappability confidence:
78%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.5)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGATATGTGACAAATACTGGA
R:
GATGCATTTGGGAGGAGGGGA
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types