MmuEX1013646 @ mm10
Exon Skipping
Gene
ENSMUSG00000070594 | Gm4788
Description
predicted gene 4788 [Source:MGI Symbol;Acc:MGI:3646434]
Coordinates
chr1:139593754-139781236:-
Coord C1 exon
chr1:139781096-139781236
Coord A exon
chr1:139628136-139628309
Coord C2 exon
chr1:139593754-139593936
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTATATCTGCTTCTTTTCAGAAA
3' ss Score
9.4
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
ATACACAGCATTGTTAATGACAGGGTTCCCAGAAGGACCACCACATCTGGAGCTTTAAGCTTGAGAACATGGGGTTCTGCAGCATGTTGCTCTTATCCAATATCCTCCTAACTGCATGGCTTTCCACTGCTAAAGGGGAAG
Seq A exon
AAAAGACATGCTCGCTTCCTTATATTCCAAATGGTATCTACACACCTCACAGGATTATACACAGAACTGATGATGAAATCAGATATGAATGTAAAGATGGCTTCTATCCTGCAACCAGATCAACAGTTTCAAAGTGTACACTCACTGGCTGGATCCCTGCTCCAAGATGTACCT
Seq C2 exon
ATCCAACAGGGAAATGTGGGCCTCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCATTACCAGTATATGCATCATTATCATCAGTTGAATATCAGTGTCAGAAGTATTATCTCCTTAAAGGAAGTAAGACAATAACATGTAGAAATGGAACGTGGTCTGAGCCACCAACCTGTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070594_MULTIEX1-13/17=C1-17
Average complexity
C3
Mappability confidence:
94%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGTTCTGCAGCATGTTG
R:
GGCTCAGACCACGTTCCATTT
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types