MmuEX0002790 @ mm10
Exon Skipping
Gene
ENSMUSG00000070594 | Gm4788
Description
predicted gene 4788 [Source:MGI Symbol;Acc:MGI:3646434]
Coordinates
chr1:139622055-139628309:-
Coord C1 exon
chr1:139628136-139628309
Coord A exon
chr1:139622604-139622798
Coord C2 exon
chr1:139622055-139622231
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTAATTTCGAGTGA
3' ss Score
-7.4
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
AAAAGACATGCTCGCTTCCTTATATTCCAAATGGTATCTACACACCTCACAGGATTATACACAGAACTGATGATGAAATCAGATATGAATGTAAAGATGGCTTCTATCCTGCAACCAGATCAACAGTTTCAAAGTGTACACTCACTGGCTGGATCCCTGCTCCAAGATGTACCT
Seq A exon
TGAAACCTTGTGATTTTCCACAACTCAAATATGGACATCTGTATTACGAAGAGAGAGTAAGACCCTACTTCCCAGTGTCTATAGGAAAGGAATACAGCTATTACTGTGACGACGGGTTTTCAACACCTTCTGGGTCATACTGGGACTACCTTCGTTGCACAGCACAAGGGTGGGAGCCTAAAGTCCCATGCCTCA
Seq C2 exon
GAAAATGTGTTTTCCATTATGTGGAGAATGGAGAATCTTCACACTGGGAAAACAACTACGTGCAGGGTCAGTCTGTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCAAAATGATCAAGATATAATGACATGTACAGAGAATGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070594_MULTIEX1-14/17=13-15
Average complexity
C2
Mappability confidence:
93%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCTATCCTGCAACCAG
R:
GATGCATTTGGGAGGAGGGGA
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types