MmuEX0002790 @ mm9
Exon Skipping
Gene
ENSMUSG00000090623 | AL837518.1
Description
complement factor H-related 3 [Source:MGI Symbol;Acc:MGI:3647418]
Coordinates
chr1:141518632-141524888:-
Coord C1 exon
chr1:141524713-141524888
Coord A exon
chr1:141519181-141519375
Coord C2 exon
chr1:141518632-141518808
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTAATTTCGAGTGA
3' ss Score
-7.4
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
AGAAAAGACATGCTCGCTTCCTTATATTCCAAATGGTATCTACACACCTCACAGGATTATACACAGAACTGATGATGAAATCAGATATGAATGTAAAGATGGCTTCTATCCTGCAACCAGATCAACAGTTTCAAAGTGTACACTCACTGGCTGGATCCCTGCTCCAAGATGTACCT
Seq A exon
TGAAACCTTGTGATTTTCCACAACTCAAATATGGACATCTGTATTACGAAGAGAGAGTAAGACCCTACTTCCCAGTGTCTATAGGAAAGGAATACAGCTATTACTGTGACGACGGGTTTTCAACACCTTCTGGGTCATACTGGGACTACCTTCGTTGCACAGCACAAGGGTGGGAGCCTAAAGTCCCATGCCTCA
Seq C2 exon
GAAAATGTGTTTTCCATTATGTGGAGAATGGAGAATCTTCACACTGGGAAAACAACTACGTGCAGGGTCAGTCTGTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCAAAATGATCAAGATATAATGACATGTACAGAGAATGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090623_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAGACATGCTCGCTTCCT
R:
GACTGACCCTGCACGTAGTTG
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types