RnoEX0001778 @ rn6
Exon Skipping
Gene
ENSRNOG00000021575 | AABR07021096.1
Description
complement factor H-related 2 [Source:NCBI gene;Acc:688887]
Coordinates
chr13:56660676-56704733:-
Coord C1 exon
chr13:56704560-56704733
Coord A exon
chr13:56693371-56693565
Coord C2 exon
chr13:56660676-56660858
Length
195 bp
Sequences
Splice sites
3' ss Seq
GTTTTAATTTTTATTGCAAGTGG
3' ss Score
2.59
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAGTGAAATGCTTAGCTCCTCATATTCCAAATGGTAACTACACACCTCACAGGATTAACTACACAGCTGAAGATGAAATACAGTATGAATGTACAGATGGCTTCTACCCTACAACCCAGGGAACTGTTGCAAAGTGTACAAGTACTGGATGGATTCCTGCTCCAAGATGTAGTT
Seq A exon
TGGAACCTTGTGATTTTCCACAATTCAAAAATGGATATTTATATCATGAAAACATACGTAGATCTTACTTCCCAGTACCTATAGGAAAGGAGTTCAGCTATTACTGTGACAATGGGTTTTTGACACCTTCAGGATCATACTGGGACTACCTTCGTTGTACAAGACAAGGGTGGGAGCCTGAAGTCCCATGCCTCA
Seq C2 exon
ATTCAACAAAGATATGTGGGCCTCCTCCACCTATTGAGAATGGAGACATCACATCCTTCCCACTACCAGTATACATACCACCATCATCAGTTGATTATCAGTGCCAGTATTTGTATCAAATGCAGGGCAACAAAACAATCATATGTATAAATGGAGACTGGTCAGAGCCACCAAAATGTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021575_MULTIEX1-1/8=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=78%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0008415=Sushi=PU(95.4=92.5)
C2:
PF0008415=Sushi=WD(100=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCTACCCTACAACCCA
R:
TGGCTCTGACCAGTCTCCATT
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]