RnoEX0048066 @ rn6
Exon Skipping
Gene
ENSRNOG00000052604 | LOC100361907
Description
complement factor H-related protein B [Source:RGD Symbol;Acc:2319172]
Coordinates
chr13:56734059-56747138:-
Coord C1 exon
chr13:56747024-56747138
Coord A exon
chr13:56736169-56736345
Coord C2 exon
chr13:56734059-56734241
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCAATTTTATTTTACATTAGAGT
3' ss Score
5.12
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAGGGTCAGTCTGCAAAAGTCCAGTGTTACAGTGGCTATAGTCTTCCAAATGGTCAAGATACAATGATATGTACAGAAAATGGCTGGTCCCCTCCTCCCAAATGCGTCCGTATCA
Seq A exon
AGTCATGTGATATGCCTGTGTTTGAGAATGCTGTAATTAAGAATAATAGCACATGGTTTAAACTCAACGACAAAATAGACTATGAATGCCATGATGGATATGAAAACAAATATAAACAAACCAAAGGCTCCATAACTTGTAATGATGATGGATGGTCTGATAAGCCCTCATGTTATG
Seq C2 exon
ATTCAACAAAGATCTGTGGGCCTCCTCCACCTATTGACAATGGAGACACCACATCCTTCCCACTACAACGATACATACCATCATCATCAGTTGAATATCAGTGCCAGTCTTTATACCAACTGCAGGGCAACAAGACAATAATATGTATAAATGGAGAGTGGTCTGATCCACCAAAATGTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052604-'10-16,'10-11,11-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(66.7=87.2)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAGTCTGCAAAAGTCCA
R:
TTGTCTTGTTGCCCTGCAGTT
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]