GgaEX6043697 @ galGal3
Exon Skipping
Gene
ENSGALG00000003424 | E1C2D6_CHICK
Description
NA
Coordinates
chr8:5384357-5384875:+
Coord C1 exon
chr8:5384357-5384544
Coord A exon
chr8:5384650-5384727
Coord C2 exon
chr8:5384806-5384875
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGATGTTGTTCCTCCTGCAGGTG
3' ss Score
10.01
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TCTGTACCCCATCCCCAGGTAAAAGTGACGATGAAGACAGTGTCTGCAAAATGGGCCCAGCCTCAGCGAAGGGAGCTGAGGAGGGGAAGGACCACAAGCGGCCCAAGCGCCCGCGCACCATCCTGACCACGCAACAGCGCAGGGCCTTCAAGGCGTCCTTCGAGGTCTCCTCCAAGCCCTGCAGGAAG
Seq A exon
GTGCGGGAGACACTGGCAGCCGAGACAGGGCTGAGCGTGCGCGTGGTGCAGGTCTGGTTCCAGAACCAGAGAGCAAAG
Seq C2 exon
ATGAAGAAGCTGGCCAGGAGGCAGCAGCAGCAGCAGCAGGACCAGCAGAACACGCAGCGCTTGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003424-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=0.154 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(47.4=42.9)
A:
PF0004624=Homeobox=FE(43.9=100)
C2:
PF0004624=Homeobox=PD(3.5=8.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGTCTGCAAAATGGGC
R:
CCTCCTGGCCAGCTTCTTCAT
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]