GgaEX6043697 @ galGal4
Exon Skipping
Gene
ENSGALG00000003424 | LMX1A
Description
LIM homeobox transcription factor 1-alpha [Source:RefSeq peptide;Acc:NP_001244317]
Coordinates
chr8:5163273-5163772:+
Coord C1 exon
chr8:5163273-5163442
Coord A exon
chr8:5163547-5163624
Coord C2 exon
chr8:5163703-5163772
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGATGTTGTTCCTCCTGCAGGTG
3' ss Score
10.01
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTAAAAGTGACGATGAAGACAGTGTCTGCAAAATGGGCCCAGCCTCAGCGAAGGGAGCTGAGGAGGGGAAGGACCACAAGCGGCCCAAGCGCCCGCGCACCATCCTGACCACGCAACAGCGCAGGGCCTTCAAGGCGTCCTTCGAGGTCTCCTCCAAGCCCTGCAGGAAG
Seq A exon
GTGCGGGAGACACTGGCAGCCGAGACAGGGCTGAGCGTGCGCGTGGTGCAGGTCTGGTTCCAGAACCAGAGAGCAAAG
Seq C2 exon
ATGAAGAAGCTGGCCAGGAGGCAGCAGCAGCAGCAGCAGGACCAGCAGAACACGCAGCGCTTGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003424-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.115 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(47.4=47.4)
A:
PF0004624=Homeobox=FE(43.9=100)
C2:
PF0004624=Homeobox=PD(3.5=8.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGTCTGCAAAATGGGC
R:
CCTCCTGGCCAGCTTCTTCAT
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]