GgaEX6045022 @ galGal3
Exon Skipping
Gene
ENSGALG00000011413 | E1BVV4_CHICK
Description
NA
Coordinates
chr8:27488722-27490245:-
Coord C1 exon
chr8:27490085-27490245
Coord A exon
chr8:27489225-27489401
Coord C2 exon
chr8:27488722-27488863
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGATTTCTCATCAGCTG
3' ss Score
6.3
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCAACCGTTTGACCCTCATTACAAAATTAATAGCGCTGTTTCGAACATTATCTGTTCTATAACTTTTGGGAACCGCTTCAACTACCATGACAGCAACTTCCAGGAATTACTGCACTTGCTTGCAGAAACACTGCTGCTGATAGGAAGTTTCTGGGGCCAG
Seq A exon
CTGTATAATGCTTTCCCTCTGATAATGAGATGGCTACCAGGGCCCTTCAGGAAGATATTCAGGCACTGGGAGAAACTGCAGCGTTTTGTGAGGGGAGTGATTGCAAAACACAAGGAGGACTTGGACCAGTCTGACTTGGGAGATTACATTGACTGTTACTTAAAGGAAATAGAAAAG
Seq C2 exon
TGTAAGGGTGACACCAACTCCTATTTCCATGAGGAAAATCTGCTCTGCTCCACACTGGACCTCTTCTTGACTGGGACAGAGACAACAGCAACCGCCATCCGCTGGGCTCTGCTCTACATGGCCGCGTACCCCCACATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413-'4-5,'4-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(12.6=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACCGTTTGACCCTCATT
R:
GGTTGCTGTTGTCTCTGTCCC
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]