GgaEX6045022 @ galGal4
Exon Skipping
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25613734-25615257:-
Coord C1 exon
chr8:25615097-25615257
Coord A exon
chr8:25614237-25614413
Coord C2 exon
chr8:25613734-25613875
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGATTTCTCATCAGCTG
3' ss Score
6.3
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCAACCGTTTGACCCTCATTACAAAATTAATAGCGCTGTTTCGAACATTATCTGTTCTATAACTTTTGGGAACCGCTTCAACTACCATGACAGCAACTTCCAGGAATTACTGCACTTGCTTGCAGAAACACTGCTGCTGATAGGAAGTTTCTGGGGCCAG
Seq A exon
CTGTATAATGCTTTCCCTCTGATAATGAGATGGCTACCAGGGCCCTTCAGGAAGATATTCAGGCACTGGGAGAAACTGCAGCGTTTTGTGAGGGGAGTGATTGCAAAACACAAGGAGGACTTGGACCAGTCTGACTTGGGAGATTACATTGACTGTTACTTAAAGGAAATAGAAAAG
Seq C2 exon
TGTAAGGGTGACACCAACTCCTATTTCCATGAGGAAAATCTGCTCTGCTCCACACTGGACCTCTTCTTGACTGGGACAGAGACAACAGCAACCGCCATCCGCTGGGCTCTGCTCTACATGGCCGCGTACCCCCACATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
PF0006717=p450=FE(13.2=100)
C2:
PF0006717=p450=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACCGTTTGACCCTCATT
R:
GGTTGCTGTTGTCTCTGTCCC
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]